Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Scn1bP97952 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Scn1bP97952 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC14.1□□□□□ -0.15
Scn1bP97952 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC14.1□□□□□ -0.15
Scn1bP97952 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.1□□□□□ -0.15
Scn1bP97952 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Scn1bP97952 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Scn1bP97952 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.1□□□□□ -0.15
Scn1bP97952 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Scn1bP97952 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.09□□□□□ -0.15
Scn1bP97952 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.09□□□□□ -0.15
Scn1bP97952 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Scn1bP97952 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.09□□□□□ -0.15
Scn1bP97952 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Scn1bP97952 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Scn1bP97952 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Scn1bP97952 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Scn1bP97952 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.08□□□□□ -0.15
Scn1bP97952 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Scn1bP97952 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Scn1bP97952 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
Scn1bP97952 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Scn1bP97952 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Scn1bP97952 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.08□□□□□ -0.16
Scn1bP97952 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Scn1bP97952 Odf3b-204ENSMUST00000227834 930 ntBASIC14.08□□□□□ -0.16
Scn1bP97952 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Scn1bP97952 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Scn1bP97952 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Scn1bP97952 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Scn1bP97952 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Scn1bP97952 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Scn1bP97952 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.07□□□□□ -0.16
Scn1bP97952 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Scn1bP97952 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Scn1bP97952 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Scn1bP97952 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Scn1bP97952 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Scn1bP97952 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms