Protein–RNA interactions for Protein: P59240

Nphp4, Nephrocystin-4, mousemouse

Predictions only

Length 1,425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nphp4P59240 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC20.7■□□□□ 0.9
Nphp4P59240 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 Mir7023-201ENSMUST00000185093 64 ntBASIC20.7■□□□□ 0.9
Nphp4P59240 AC124732.2-201ENSMUST00000221977 316 ntBASIC20.7■□□□□ 0.9
Nphp4P59240 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nphp4P59240 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Nphp4P59240 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Nphp4P59240 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Nphp4P59240 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Nphp4P59240 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Gm8116-201ENSMUST00000182917 1201 ntBASIC20.69■□□□□ 0.9
Nphp4P59240 Gm27622-201ENSMUST00000183779 60 ntBASIC20.69■□□□□ 0.9
Nphp4P59240 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nphp4P59240 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Nphp4P59240 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Gm9824-201ENSMUST00000178707 561 ntBASIC20.68■□□□□ 0.9
Nphp4P59240 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Nphp4P59240 Mxra8os-201ENSMUST00000097740 687 ntBASIC20.68■□□□□ 0.9
Nphp4P59240 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC20.68■□□□□ 0.9
Nphp4P59240 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Nphp4P59240 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Nphp4P59240 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Nphp4P59240 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Nphp4P59240 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC20.67■□□□□ 0.9
Nphp4P59240 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Gm13223-201ENSMUST00000118609 747 ntBASIC20.67■□□□□ 0.9
Nphp4P59240 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Gm37277-201ENSMUST00000194052 1111 ntBASIC20.67■□□□□ 0.9
Nphp4P59240 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC20.67■□□□□ 0.9
Nphp4P59240 Rbfox2-208ENSMUST00000227930 1218 ntBASIC20.67■□□□□ 0.9
Nphp4P59240 Gm10313-201ENSMUST00000095320 1002 ntBASIC20.67■□□□□ 0.9
Nphp4P59240 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nphp4P59240 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Nphp4P59240 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Nphp4P59240 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC20.66■□□□□ 0.9
Nphp4P59240 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Nphp4P59240 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Nphp4P59240 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC20.66■□□□□ 0.9
Nphp4P59240 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Nphp4P59240 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nphp4P59240 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms