Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Msx1P13297 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Msx1P13297 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Msx1P13297 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Msx1P13297 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC14.59□□□□□ -0.07
Msx1P13297 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Msx1P13297 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Msx1P13297 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Msx1P13297 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Msx1P13297 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Msx1P13297 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.58□□□□□ -0.07
Msx1P13297 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14.58□□□□□ -0.08
Msx1P13297 Gm11025-201ENSMUST00000140773 466 ntBASIC14.58□□□□□ -0.08
Msx1P13297 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Msx1P13297 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.58□□□□□ -0.08
Msx1P13297 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.58□□□□□ -0.08
Msx1P13297 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Msx1P13297 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.58□□□□□ -0.08
Msx1P13297 Gm11873-201ENSMUST00000117877 1304 ntBASIC14.58□□□□□ -0.08
Msx1P13297 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 AC133083.1-201ENSMUST00000221736 2209 ntBASIC14.58□□□□□ -0.08
Msx1P13297 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.58□□□□□ -0.08
Msx1P13297 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Msx1P13297 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Msx1P13297 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.58□□□□□ -0.08
Msx1P13297 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Msx1P13297 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 Gm14701-201ENSMUST00000117156 348 ntBASIC14.57□□□□□ -0.08
Msx1P13297 Gm11764-201ENSMUST00000120221 623 ntBASIC14.57□□□□□ -0.08
Msx1P13297 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.57□□□□□ -0.08
Msx1P13297 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.57□□□□□ -0.08
Msx1P13297 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC14.57□□□□□ -0.08
Msx1P13297 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.57□□□□□ -0.08
Msx1P13297 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Msx1P13297 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.57□□□□□ -0.08
Msx1P13297 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Msx1P13297 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Msx1P13297 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.56□□□□□ -0.08
Msx1P13297 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Msx1P13297 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Msx1P13297 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Msx1P13297 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.56□□□□□ -0.08
Msx1P13297 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.56□□□□□ -0.08
Msx1P13297 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC14.56□□□□□ -0.08
Msx1P13297 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.56□□□□□ -0.08
Msx1P13297 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.56□□□□□ -0.08
Msx1P13297 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Msx1P13297 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.56□□□□□ -0.08
Msx1P13297 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Msx1P13297 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms