Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chmp6P0C0A3 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chmp6P0C0A3 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chmp6P0C0A3 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chmp6P0C0A3 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chmp6P0C0A3 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chmp6P0C0A3 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Chmp6P0C0A3 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.73■□□□□ 0.27
Chmp6P0C0A3 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms