Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Nr1i3O35627 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Nr1i3O35627 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Nr1i3O35627 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Nr1i3O35627 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Nr1i3O35627 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Nr1i3O35627 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Gm8318-201ENSMUST00000182954 872 ntBASIC16.53■□□□□ 0.24
Nr1i3O35627 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Nr1i3O35627 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Nr1i3O35627 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Nr1i3O35627 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1i3O35627 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.52■□□□□ 0.24
Nr1i3O35627 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
Nr1i3O35627 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1i3O35627 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Nr1i3O35627 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1i3O35627 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1i3O35627 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1i3O35627 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.52■□□□□ 0.23
Nr1i3O35627 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1i3O35627 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.51■□□□□ 0.23
Nr1i3O35627 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.51■□□□□ 0.23
Nr1i3O35627 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.51■□□□□ 0.23
Nr1i3O35627 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.51■□□□□ 0.23
Nr1i3O35627 Gm8097-201ENSMUST00000117903 829 ntBASIC16.51■□□□□ 0.23
Nr1i3O35627 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.51■□□□□ 0.23
Nr1i3O35627 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Nr1i3O35627 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Nr1i3O35627 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1i3O35627 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1i3O35627 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms