Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Mir7070-201ENSMUST00000183657 86 ntBASIC20.81■□□□□ 0.92
Scn4aQ9ER60 AC164567.1-201ENSMUST00000219185 960 ntBASIC20.81■□□□□ 0.92
Scn4aQ9ER60 AC110817.1-201ENSMUST00000225706 605 ntBASIC20.81■□□□□ 0.92
Scn4aQ9ER60 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Gm13350-201ENSMUST00000120519 479 ntBASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Scn4aQ9ER60 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Gm18934-201ENSMUST00000216671 1044 ntBASIC20.79■□□□□ 0.92
Scn4aQ9ER60 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Mettl6-204ENSMUST00000227595 1027 ntBASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Scn4aQ9ER60 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gm7584-201ENSMUST00000175829 940 ntBASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gm38230-201ENSMUST00000193572 1159 ntBASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gm7446-201ENSMUST00000221035 1240 ntBASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Gm24526-201ENSMUST00000082921 158 ntBASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.78■□□□□ 0.92
Scn4aQ9ER60 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Gm9823-201ENSMUST00000051212 327 ntBASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.77■□□□□ 0.92
Scn4aQ9ER60 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Scn4aQ9ER60 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Scn4aQ9ER60 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Scn4aQ9ER60 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC20.76■□□□□ 0.91
Scn4aQ9ER60 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms