Protein–RNA interactions for Protein: Q9CY97

Ssu72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, mousemouse

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ssu72Q9CY97 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm4609-201ENSMUST00000106443 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm5138-201ENSMUST00000113842 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm15191-201ENSMUST00000117933 1000 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm12182-201ENSMUST00000118655 1008 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm13882-201ENSMUST00000120886 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm10284-201ENSMUST00000145057 1005 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm10481-201ENSMUST00000179228 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm2574-201ENSMUST00000181051 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm3200-201ENSMUST00000181493 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm8825-201ENSMUST00000182565 998 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm4518-201ENSMUST00000182638 718 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm8330-201ENSMUST00000182754 1008 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm4575-201ENSMUST00000182991 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm8709-201ENSMUST00000183230 1012 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm18101-201ENSMUST00000215769 548 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm10293-201ENSMUST00000076317 1002 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm6316-201ENSMUST00000082064 1020 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.31■□□□□ 0.04
Ssu72Q9CY97 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Gm43509-201ENSMUST00000196551 2594 ntBASIC15.3■□□□□ 0.04
Ssu72Q9CY97 AL672049.1-201ENSMUST00000197943 91 ntBASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ssu72Q9CY97 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ssu72Q9CY97 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ssu72Q9CY97 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms