Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ccdc40Q8BI79 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ccdc40Q8BI79 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ccdc40Q8BI79 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Gm9172-201ENSMUST00000212092 954 ntBASIC16.1■□□□□ 0.17
Ccdc40Q8BI79 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms