Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim56Q80VI1 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC18.15■□□□□ 0.5
Trim56Q80VI1 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Gm18246-201ENSMUST00000221023 728 ntBASIC18.15■□□□□ 0.5
Trim56Q80VI1 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim56Q80VI1 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim56Q80VI1 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 BC037039-201ENSMUST00000192003 2205 ntBASIC18.13■□□□□ 0.49
Trim56Q80VI1 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Gm7556-201ENSMUST00000201178 1084 ntBASIC18.13■□□□□ 0.49
Trim56Q80VI1 Gm7229-201ENSMUST00000214719 1007 ntBASIC18.13■□□□□ 0.49
Trim56Q80VI1 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms