Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Rnf220Q6PDX6 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Rnf220Q6PDX6 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Rnf220Q6PDX6 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Rnf220Q6PDX6 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Rnf220Q6PDX6 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Arhgef4-208ENSMUST00000211073 171 ntBASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Rnf220Q6PDX6 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.63□□□□□ -0.07
Rnf220Q6PDX6 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Rnf220Q6PDX6 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms