Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Gm12644-201ENSMUST00000119935 606 ntBASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Cmtm5-203ENSMUST00000227441 610 ntBASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Sh3rf1Q69ZI1 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 AC153794.1-201ENSMUST00000169148 126 ntBASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.64■□□□□ 0.09
Sh3rf1Q69ZI1 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Gm15372-201ENSMUST00000120729 834 ntBASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.63■□□□□ 0.09
Sh3rf1Q69ZI1 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sh3rf1Q69ZI1 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sh3rf1Q69ZI1 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sh3rf1Q69ZI1 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Sh3rf1Q69ZI1 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sh3rf1Q69ZI1 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms