Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Gm10355-201ENSMUST00000097146 517 ntBASIC18.14■□□□□ 0.49
Limch1Q3UH68 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Limch1Q3UH68 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.13■□□□□ 0.49
Limch1Q3UH68 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Gm13418-201ENSMUST00000119097 944 ntBASIC18.13■□□□□ 0.49
Limch1Q3UH68 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Gm7230-201ENSMUST00000173026 815 ntBASIC18.13■□□□□ 0.49
Limch1Q3UH68 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Limch1Q3UH68 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Gm11594-201ENSMUST00000122313 162 ntBASIC18.12■□□□□ 0.49
Limch1Q3UH68 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.12■□□□□ 0.49
Limch1Q3UH68 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Limch1Q3UH68 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Limch1Q3UH68 BC037039-201ENSMUST00000192003 2205 ntBASIC18.11■□□□□ 0.49
Limch1Q3UH68 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Gm11779-201ENSMUST00000118541 368 ntBASIC18.11■□□□□ 0.49
Limch1Q3UH68 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.11■□□□□ 0.49
Limch1Q3UH68 AC117588.1-201ENSMUST00000228510 999 ntBASIC18.11■□□□□ 0.49
Limch1Q3UH68 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.11■□□□□ 0.49
Limch1Q3UH68 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Limch1Q3UH68 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.1■□□□□ 0.49
Limch1Q3UH68 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Limch1Q3UH68 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms