Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Col28a1Q2UY11 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15□□□□□ -0.01
Col28a1Q2UY11 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Col28a1Q2UY11 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Gm37912-201ENSMUST00000191895 3076 ntBASIC15□□□□□ -0.01
Col28a1Q2UY11 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Gm6623-201ENSMUST00000173570 544 ntBASIC15□□□□□ -0.01
Col28a1Q2UY11 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Gm27742-201ENSMUST00000184667 60 ntBASIC15□□□□□ -0.01
Col28a1Q2UY11 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Gm45605-201ENSMUST00000210265 4269 ntBASIC15□□□□□ -0.01
Col28a1Q2UY11 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Col28a1Q2UY11 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15□□□□□ -0.01
Col28a1Q2UY11 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col28a1Q2UY11 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col28a1Q2UY11 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Gm24589-201ENSMUST00000116692 94 ntBASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Gm27357-201ENSMUST00000183754 135 ntBASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Gm10676-201ENSMUST00000098778 3221 ntBASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col28a1Q2UY11 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col28a1Q2UY11 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms