Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.97■□□□□ 0.31
Hmgb1P63158 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Hmgb1P63158 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.97■□□□□ 0.31
Hmgb1P63158 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Hmgb1P63158 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Hmgb1P63158 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.96■□□□□ 0.31
Hmgb1P63158 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Gm8344-201ENSMUST00000119813 856 ntBASIC16.96■□□□□ 0.31
Hmgb1P63158 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.96■□□□□ 0.31
Hmgb1P63158 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Hmgb1P63158 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Hmgb1P63158 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb1P63158 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb1P63158 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Hmgb1P63158 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.95■□□□□ 0.3
Hmgb1P63158 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
Hmgb1P63158 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.95■□□□□ 0.3
Hmgb1P63158 Gm18622-201ENSMUST00000219361 595 ntBASIC16.95■□□□□ 0.3
Hmgb1P63158 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.95■□□□□ 0.3
Hmgb1P63158 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
Hmgb1P63158 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.95■□□□□ 0.3
Hmgb1P63158 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb1P63158 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Gm33142-201ENSMUST00000193913 867 ntBASIC16.94■□□□□ 0.3
Hmgb1P63158 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Hmgb1P63158 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb1P63158 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms