Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx2P43241 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx2P43241 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
Cdx2P43241 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Cdx2P43241 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.6□□□□□ -0.07
Cdx2P43241 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdx2P43241 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Cdx2P43241 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC14.6□□□□□ -0.07
Cdx2P43241 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdx2P43241 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Cdx2P43241 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx2P43241 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Cdx2P43241 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
Cdx2P43241 Gm5745-201ENSMUST00000183748 313 ntBASIC14.59□□□□□ -0.07
Cdx2P43241 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14.59□□□□□ -0.07
Cdx2P43241 Arhgef33-209ENSMUST00000225223 714 ntBASIC14.59□□□□□ -0.07
Cdx2P43241 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Cdx2P43241 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdx2P43241 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdx2P43241 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdx2P43241 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC14.58□□□□□ -0.07
Cdx2P43241 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC14.58□□□□□ -0.07
Cdx2P43241 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdx2P43241 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Cdx2P43241 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Cdx2P43241 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdx2P43241 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Cdx2P43241 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cdx2P43241 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.58□□□□□ -0.08
Cdx2P43241 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.58□□□□□ -0.08
Cdx2P43241 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Cdx2P43241 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cdx2P43241 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.58□□□□□ -0.08
Cdx2P43241 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.58□□□□□ -0.08
Cdx2P43241 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cdx2P43241 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdx2P43241 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms