Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.26■□□□□ 0.83
Col18a1P39061 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col18a1P39061 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col18a1P39061 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Gm8062-201ENSMUST00000139696 444 ntBASIC20.26■□□□□ 0.83
Col18a1P39061 Mir1982-201ENSMUST00000157368 74 ntBASIC20.26■□□□□ 0.83
Col18a1P39061 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC20.26■□□□□ 0.83
Col18a1P39061 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col18a1P39061 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Col18a1P39061 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 AC154687.2-201ENSMUST00000223853 640 ntBASIC20.26■□□□□ 0.83
Col18a1P39061 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC20.25■□□□□ 0.83
Col18a1P39061 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Gm4691-201ENSMUST00000182339 1000 ntBASIC20.25■□□□□ 0.83
Col18a1P39061 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC20.25■□□□□ 0.83
Col18a1P39061 Gm2451-201ENSMUST00000199447 999 ntBASIC20.25■□□□□ 0.83
Col18a1P39061 Gm10290-201ENSMUST00000200451 999 ntBASIC20.25■□□□□ 0.83
Col18a1P39061 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC20.25■□□□□ 0.83
Col18a1P39061 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.25■□□□□ 0.83
Col18a1P39061 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col18a1P39061 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col18a1P39061 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col18a1P39061 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
Col18a1P39061 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC20.24■□□□□ 0.83
Col18a1P39061 Gm12742-201ENSMUST00000117326 410 ntBASIC20.24■□□□□ 0.83
Col18a1P39061 Mir1894-201ENSMUST00000122802 81 ntBASIC20.24■□□□□ 0.83
Col18a1P39061 Snora78-201ENSMUST00000158630 128 ntBASIC20.24■□□□□ 0.83
Col18a1P39061 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC20.24■□□□□ 0.83
Col18a1P39061 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
Col18a1P39061 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col18a1P39061 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC20.24■□□□□ 0.83
Col18a1P39061 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 AC114008.2-201ENSMUST00000227699 1347 ntBASIC20.24■□□□□ 0.83
Col18a1P39061 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col18a1P39061 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC20.23■□□□□ 0.83
Col18a1P39061 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC20.23■□□□□ 0.83
Col18a1P39061 Gm7067-201ENSMUST00000207698 1249 ntBASIC20.23■□□□□ 0.83
Col18a1P39061 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC20.23■□□□□ 0.83
Col18a1P39061 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Gm5356-201ENSMUST00000093326 615 ntBASIC20.23■□□□□ 0.83
Col18a1P39061 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col18a1P39061 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC20.22■□□□□ 0.83
Col18a1P39061 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Col18a1P39061 Gm12341-201ENSMUST00000119724 503 ntBASIC20.22■□□□□ 0.83
Col18a1P39061 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Col18a1P39061 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC20.22■□□□□ 0.83
Col18a1P39061 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC20.22■□□□□ 0.83
Col18a1P39061 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col18a1P39061 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Col18a1P39061 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Gm7558-201ENSMUST00000193221 1165 ntBASIC20.21■□□□□ 0.83
Col18a1P39061 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC20.21■□□□□ 0.83
Col18a1P39061 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col18a1P39061 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
Col18a1P39061 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC20.2■□□□□ 0.82
Col18a1P39061 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms