Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Cdx1P18111 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Cdx1P18111 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Cdx1P18111 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.5□□□□□ -0.41
Cdx1P18111 Gm21451-201ENSMUST00000111062 2775 ntBASIC12.5□□□□□ -0.41
Cdx1P18111 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Cdx1P18111 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC12.49□□□□□ -0.41
Cdx1P18111 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Gm37025-201ENSMUST00000195159 829 ntBASIC12.49□□□□□ -0.41
Cdx1P18111 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Cdx1P18111 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Cdx1P18111 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Cdx1P18111 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC12.48□□□□□ -0.41
Cdx1P18111 Ntrk2-208ENSMUST00000225583 2719 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Cdx1P18111 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC12.48□□□□□ -0.41
Cdx1P18111 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Cdx1P18111 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC12.48□□□□□ -0.41
Cdx1P18111 Gm13401-201ENSMUST00000117074 291 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Gm9103-201ENSMUST00000119371 405 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC12.48□□□□□ -0.41
Cdx1P18111 Gm21559-201ENSMUST00000220638 855 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Gm8587-201ENSMUST00000076538 843 ntBASIC12.48□□□□□ -0.41
Cdx1P18111 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC12.48□□□□□ -0.41
Cdx1P18111 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Cdx1P18111 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC12.47□□□□□ -0.41
Cdx1P18111 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.47□□□□□ -0.41
Cdx1P18111 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.47□□□□□ -0.41
Cdx1P18111 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Cdx1P18111 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC12.47□□□□□ -0.41
Cdx1P18111 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC12.47□□□□□ -0.41
Cdx1P18111 Gm9013-201ENSMUST00000132939 882 ntBASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms