Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.7■□□□□ 0.26
RaraP11416 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.69■□□□□ 0.26
RaraP11416 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
RaraP11416 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.69■□□□□ 0.26
RaraP11416 Gm15165-201ENSMUST00000118140 502 ntBASIC16.69■□□□□ 0.26
RaraP11416 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Gm27704-201ENSMUST00000185094 107 ntBASIC16.69■□□□□ 0.26
RaraP11416 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
RaraP11416 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
RaraP11416 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.69■□□□□ 0.26
RaraP11416 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.69■□□□□ 0.26
RaraP11416 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RaraP11416 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.69■□□□□ 0.26
RaraP11416 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
RaraP11416 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.68■□□□□ 0.26
RaraP11416 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
RaraP11416 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.68■□□□□ 0.26
RaraP11416 Gm7506-201ENSMUST00000207758 815 ntBASIC16.68■□□□□ 0.26
RaraP11416 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Gm18622-201ENSMUST00000219361 595 ntBASIC16.68■□□□□ 0.26
RaraP11416 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC16.68■□□□□ 0.26
RaraP11416 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.68■□□□□ 0.26
RaraP11416 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
RaraP11416 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
RaraP11416 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
RaraP11416 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RaraP11416 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC16.67■□□□□ 0.26
RaraP11416 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
RaraP11416 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.67■□□□□ 0.26
RaraP11416 Gm14722-201ENSMUST00000118943 689 ntBASIC16.67■□□□□ 0.26
RaraP11416 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.67■□□□□ 0.26
RaraP11416 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
RaraP11416 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
RaraP11416 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
RaraP11416 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RaraP11416 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
RaraP11416 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RaraP11416 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RaraP11416 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.66■□□□□ 0.26
RaraP11416 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
RaraP11416 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
RaraP11416 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RaraP11416 Gm19164-201ENSMUST00000210667 640 ntBASIC16.66■□□□□ 0.26
RaraP11416 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms