Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Hoxd3P09027 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC12□□□□□ -0.49
Hoxd3P09027 Gm42670-201ENSMUST00000201816 1292 ntBASIC12□□□□□ -0.49
Hoxd3P09027 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC12□□□□□ -0.49
Hoxd3P09027 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Hoxd3P09027 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC12□□□□□ -0.49
Hoxd3P09027 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm15467-201ENSMUST00000120582 445 ntBASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm7787-201ENSMUST00000216858 688 ntBASIC11.99□□□□□ -0.49
Hoxd3P09027 AC122024.2-201ENSMUST00000220086 871 ntBASIC11.99□□□□□ -0.49
Hoxd3P09027 AC158538.2-201ENSMUST00000225455 906 ntBASIC11.99□□□□□ -0.49
Hoxd3P09027 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 AC122901.1-201ENSMUST00000214203 1790 ntBASIC11.99□□□□□ -0.49
Hoxd3P09027 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC11.99□□□□□ -0.49
Hoxd3P09027 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Hoxd3P09027 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm44729-201ENSMUST00000206759 2052 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm38327-201ENSMUST00000195852 1755 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm11779-201ENSMUST00000118541 368 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm5264-201ENSMUST00000190584 848 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm43332-201ENSMUST00000202511 1044 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm45167-201ENSMUST00000208007 322 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 AC132104.2-201ENSMUST00000215011 266 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 AC151836.1-202ENSMUST00000226259 753 ntBASIC11.98□□□□□ -0.49
Hoxd3P09027 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms