Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Gm7774-201ENSMUST00000200064 533 ntBASIC16.95■□□□□ 0.3
Prom1O54990 Gm18057-201ENSMUST00000208220 503 ntBASIC16.95■□□□□ 0.3
Prom1O54990 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Prom1O54990 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.95■□□□□ 0.3
Prom1O54990 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Prom1O54990 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Prom1O54990 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Prom1O54990 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Prom1O54990 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC16.94■□□□□ 0.3
Prom1O54990 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Gm5779-201ENSMUST00000218467 910 ntBASIC16.94■□□□□ 0.3
Prom1O54990 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Prom1O54990 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Prom1O54990 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Prom1O54990 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.93■□□□□ 0.3
Prom1O54990 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.93■□□□□ 0.3
Prom1O54990 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Gm14722-201ENSMUST00000118943 689 ntBASIC16.93■□□□□ 0.3
Prom1O54990 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.93■□□□□ 0.3
Prom1O54990 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.93■□□□□ 0.3
Prom1O54990 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.93■□□□□ 0.3
Prom1O54990 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Prom1O54990 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Prom1O54990 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Prom1O54990 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Prom1O54990 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.92■□□□□ 0.3
Prom1O54990 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.92■□□□□ 0.3
Prom1O54990 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Prom1O54990 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Gm38294-201ENSMUST00000192831 381 ntBASIC16.92■□□□□ 0.3
Prom1O54990 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.92■□□□□ 0.3
Prom1O54990 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Prom1O54990 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Prom1O54990 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.91■□□□□ 0.3
Prom1O54990 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Prom1O54990 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Prom1O54990 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Prom1O54990 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Prom1O54990 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Prom1O54990 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms