Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trim3Q9R1R2 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Sybu-209ENSMUST00000228639 4113 ntBASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trim3Q9R1R2 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Trim3Q9R1R2 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Gm25745-201ENSMUST00000174945 133 ntBASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim3Q9R1R2 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms