Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim11Q99PQ2 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Gm17807-201ENSMUST00000186869 298 ntBASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim11Q99PQ2 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim11Q99PQ2 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Gm8655-201ENSMUST00000221159 852 ntBASIC17.6■□□□□ 0.41
Trim11Q99PQ2 AC160980.1-201ENSMUST00000224136 970 ntBASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim11Q99PQ2 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim11Q99PQ2 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms