Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Usp40Q8BWR4 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Nudt18-203ENSMUST00000228768 1578 ntBASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Gm7556-201ENSMUST00000201178 1084 ntBASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Gm43125-201ENSMUST00000201724 730 ntBASIC21.11■□□□□ 0.97
Usp40Q8BWR4 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Usp40Q8BWR4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 CT025626.1-201ENSMUST00000223735 1455 ntBASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Gm44872-201ENSMUST00000207864 420 ntBASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 CT030684.1-201ENSMUST00000227292 914 ntBASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Usp40Q8BWR4 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Gm18057-201ENSMUST00000208220 503 ntBASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Hivep3-201ENSMUST00000084306 2973 ntBASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Usp40Q8BWR4 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp40Q8BWR4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp40Q8BWR4 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms