Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sh3rf1Q69ZI1 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm43514-201ENSMUST00000198852 424 ntBASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Gm6443-201ENSMUST00000203599 874 ntBASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Sh3rf1Q69ZI1 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sh3rf1Q69ZI1 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms