Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim28Q62318 Prob1-201ENSMUST00000097619 3021 ntBASIC19.96■□□□□ 0.79
Trim28Q62318 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim28Q62318 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trim28Q62318 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim28Q62318 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 AC154621.1-201ENSMUST00000226155 1119 ntBASIC19.95■□□□□ 0.78
Trim28Q62318 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC19.95■□□□□ 0.78
Trim28Q62318 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim28Q62318 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim28Q62318 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Trim28Q62318 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim28Q62318 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim28Q62318 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Gm6973-201ENSMUST00000117080 721 ntBASIC19.94■□□□□ 0.78
Trim28Q62318 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC19.94■□□□□ 0.78
Trim28Q62318 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 AC131187.1-201ENSMUST00000224567 809 ntBASIC19.94■□□□□ 0.78
Trim28Q62318 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim28Q62318 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim28Q62318 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim28Q62318 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim28Q62318 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Trim28Q62318 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim28Q62318 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC19.93■□□□□ 0.78
Trim28Q62318 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim28Q62318 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim28Q62318 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC19.93■□□□□ 0.78
Trim28Q62318 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Trim28Q62318 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim28Q62318 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC19.92■□□□□ 0.78
Trim28Q62318 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Gm43767-201ENSMUST00000198933 381 ntBASIC19.92■□□□□ 0.78
Trim28Q62318 Gm43125-201ENSMUST00000201724 730 ntBASIC19.92■□□□□ 0.78
Trim28Q62318 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
Trim28Q62318 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
Trim28Q62318 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Trim28Q62318 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Gm8242-201ENSMUST00000193029 1420 ntBASIC19.92■□□□□ 0.78
Trim28Q62318 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trim28Q62318 Gm5049-201ENSMUST00000195878 1590 ntBASIC19.91■□□□□ 0.78
Trim28Q62318 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.91■□□□□ 0.78
Trim28Q62318 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Trim28Q62318 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Trim28Q62318 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC19.91■□□□□ 0.78
Trim28Q62318 Gm37171-201ENSMUST00000192636 1185 ntBASIC19.91■□□□□ 0.78
Trim28Q62318 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC19.91■□□□□ 0.78
Trim28Q62318 AC166341.4-201ENSMUST00000220625 123 ntBASIC19.91■□□□□ 0.78
Trim28Q62318 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Trim28Q62318 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms