Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gm15378-201ENSMUST00000121894 207 ntBASIC15.31■□□□□ 0.04
Shox2P70390 Gm18284-201ENSMUST00000172604 624 ntBASIC15.31■□□□□ 0.04
Shox2P70390 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Shox2P70390 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Shox2P70390 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Shox2P70390 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.31■□□□□ 0.04
Shox2P70390 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Shox2P70390 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shox2P70390 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.3■□□□□ 0.04
Shox2P70390 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Gm13337-201ENSMUST00000119183 1594 ntBASIC15.3■□□□□ 0.04
Shox2P70390 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.3■□□□□ 0.04
Shox2P70390 Gm10698-201ENSMUST00000182663 604 ntBASIC15.3■□□□□ 0.04
Shox2P70390 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Gm19863-201ENSMUST00000192480 2218 ntBASIC15.3■□□□□ 0.04
Shox2P70390 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.3■□□□□ 0.04
Shox2P70390 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.3■□□□□ 0.04
Shox2P70390 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.3■□□□□ 0.04
Shox2P70390 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Shox2P70390 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Shox2P70390 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.3■□□□□ 0.04
Shox2P70390 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Shox2P70390 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.3■□□□□ 0.04
Shox2P70390 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.29■□□□□ 0.04
Shox2P70390 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Carlr-201ENSMUST00000181515 2574 ntBASIC15.29■□□□□ 0.04
Shox2P70390 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.29■□□□□ 0.04
Shox2P70390 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.29■□□□□ 0.04
Shox2P70390 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC15.29■□□□□ 0.04
Shox2P70390 Timm23-208ENSMUST00000226683 750 ntBASIC15.29■□□□□ 0.04
Shox2P70390 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Shox2P70390 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.29■□□□□ 0.04
Shox2P70390 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.29■□□□□ 0.04
Shox2P70390 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Shox2P70390 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Shox2P70390 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Shox2P70390 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.28■□□□□ 0.04
Shox2P70390 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.28■□□□□ 0.04
Shox2P70390 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.28■□□□□ 0.04
Shox2P70390 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Shox2P70390 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms