Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col18a1P39061 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 AC069562.2-201ENSMUST00000224644 2146 ntBASIC20.31■□□□□ 0.84
Col18a1P39061 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Col18a1P39061 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col18a1P39061 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC20.31■□□□□ 0.84
Col18a1P39061 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC20.31■□□□□ 0.84
Col18a1P39061 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.31■□□□□ 0.84
Col18a1P39061 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.31■□□□□ 0.84
Col18a1P39061 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Col18a1P39061 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC20.3■□□□□ 0.84
Col18a1P39061 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC20.3■□□□□ 0.84
Col18a1P39061 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Col18a1P39061 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col18a1P39061 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Gm12390-201ENSMUST00000117897 397 ntBASIC20.29■□□□□ 0.84
Col18a1P39061 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Col18a1P39061 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC20.29■□□□□ 0.84
Col18a1P39061 Gm9257-201ENSMUST00000221254 232 ntBASIC20.29■□□□□ 0.84
Col18a1P39061 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Col18a1P39061 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.29■□□□□ 0.84
Col18a1P39061 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Col18a1P39061 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Col18a1P39061 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Mir1247-201ENSMUST00000116706 82 ntBASIC20.29■□□□□ 0.84
Col18a1P39061 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col18a1P39061 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Col18a1P39061 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Col18a1P39061 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC20.28■□□□□ 0.84
Col18a1P39061 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Col18a1P39061 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.28■□□□□ 0.84
Col18a1P39061 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC20.28■□□□□ 0.84
Col18a1P39061 Gm45453-201ENSMUST00000211758 853 ntBASIC20.28■□□□□ 0.84
Col18a1P39061 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC20.28■□□□□ 0.84
Col18a1P39061 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col18a1P39061 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC20.27■□□□□ 0.84
Col18a1P39061 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC20.27■□□□□ 0.84
Col18a1P39061 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC20.27■□□□□ 0.84
Col18a1P39061 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC20.27■□□□□ 0.84
Col18a1P39061 Gm19220-201ENSMUST00000222682 803 ntBASIC20.27■□□□□ 0.84
Col18a1P39061 AC155252.1-201ENSMUST00000226462 1208 ntBASIC20.27■□□□□ 0.84
Col18a1P39061 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col18a1P39061 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col18a1P39061 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col18a1P39061 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col18a1P39061 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Col18a1P39061 Gm13226-201ENSMUST00000117838 404 ntBASIC20.26■□□□□ 0.83
Col18a1P39061 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
Col18a1P39061 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC20.26■□□□□ 0.83
Col18a1P39061 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC20.26■□□□□ 0.83
Col18a1P39061 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col18a1P39061 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 94.1 ms