Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Cdx1P18111 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Cdx1P18111 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.53□□□□□ -0.4
Cdx1P18111 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Cdx1P18111 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Cdx1P18111 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Cdx1P18111 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Cdx1P18111 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Cdx1P18111 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdx1P18111 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdx1P18111 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdx1P18111 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Cdx1P18111 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Cdx1P18111 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Cdx1P18111 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC12.52□□□□□ -0.41
Cdx1P18111 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Cdx1P18111 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Cdx1P18111 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC12.52□□□□□ -0.41
Cdx1P18111 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC12.52□□□□□ -0.41
Cdx1P18111 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Gm27389-201ENSMUST00000183622 195 ntBASIC12.52□□□□□ -0.41
Cdx1P18111 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC12.52□□□□□ -0.41
Cdx1P18111 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Cdx1P18111 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC12.52□□□□□ -0.41
Cdx1P18111 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Cdx1P18111 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Cdx1P18111 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.51□□□□□ -0.41
Cdx1P18111 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Cdx1P18111 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC12.51□□□□□ -0.41
Cdx1P18111 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC12.51□□□□□ -0.41
Cdx1P18111 Gm7791-201ENSMUST00000219066 539 ntBASIC12.51□□□□□ -0.41
Cdx1P18111 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Cdx1P18111 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Cdx1P18111 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Gm4217-201ENSMUST00000182243 1002 ntBASIC12.5□□□□□ -0.41
Cdx1P18111 Mir1668-201ENSMUST00000184114 107 ntBASIC12.5□□□□□ -0.41
Cdx1P18111 Gm27741-201ENSMUST00000185060 237 ntBASIC12.5□□□□□ -0.41
Cdx1P18111 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Cdx1P18111 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms