Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
RaraP11416 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.73■□□□□ 0.27
RaraP11416 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RaraP11416 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
RaraP11416 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.73■□□□□ 0.27
RaraP11416 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.73■□□□□ 0.27
RaraP11416 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
RaraP11416 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RaraP11416 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
RaraP11416 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.72■□□□□ 0.27
RaraP11416 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RaraP11416 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.72■□□□□ 0.27
RaraP11416 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.72■□□□□ 0.27
RaraP11416 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC16.72■□□□□ 0.27
RaraP11416 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.72■□□□□ 0.27
RaraP11416 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC16.72■□□□□ 0.27
RaraP11416 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RaraP11416 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Gm25745-201ENSMUST00000174945 133 ntBASIC16.72■□□□□ 0.27
RaraP11416 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
RaraP11416 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
RaraP11416 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
RaraP11416 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RaraP11416 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
RaraP11416 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RaraP11416 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
RaraP11416 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.71■□□□□ 0.27
RaraP11416 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RaraP11416 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.71■□□□□ 0.27
RaraP11416 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RaraP11416 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
RaraP11416 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RaraP11416 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
RaraP11416 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
RaraP11416 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
RaraP11416 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
RaraP11416 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.7■□□□□ 0.26
RaraP11416 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Efs-202ENSMUST00000227037 2540 ntBASIC16.7■□□□□ 0.26
RaraP11416 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
RaraP11416 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RaraP11416 Gm27867-201ENSMUST00000184778 125 ntBASIC16.7■□□□□ 0.26
RaraP11416 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.7■□□□□ 0.26
RaraP11416 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.7■□□□□ 0.26
RaraP11416 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.7■□□□□ 0.26
RaraP11416 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RaraP11416 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
RaraP11416 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms