Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Hoxd3P09027 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
Hoxd3P09027 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Hoxd3P09027 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC12.02□□□□□ -0.49
Hoxd3P09027 AC084391.1-201ENSMUST00000200651 141 ntBASIC12.02□□□□□ -0.49
Hoxd3P09027 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Gm6991-201ENSMUST00000218475 1178 ntBASIC12.02□□□□□ -0.49
Hoxd3P09027 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Gm43072-201ENSMUST00000200283 1671 ntBASIC12.02□□□□□ -0.49
Hoxd3P09027 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Hoxd3P09027 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Hoxd3P09027 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 Gm11185-201ENSMUST00000117732 1007 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 Gm12260-201ENSMUST00000122447 411 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Gm6546-201ENSMUST00000192096 766 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 AC159093.1-201ENSMUST00000227779 380 ntBASIC12.01□□□□□ -0.49
Hoxd3P09027 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Hoxd3P09027 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Hoxd3P09027 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms