Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC18.8■□□□□ 0.6
Col4a1P02463 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC18.8■□□□□ 0.6
Col4a1P02463 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Col4a1P02463 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Gm14026-201ENSMUST00000120625 1789 ntBASIC18.8■□□□□ 0.6
Col4a1P02463 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col4a1P02463 AC159621.2-201ENSMUST00000223519 1326 ntBASIC18.8■□□□□ 0.6
Col4a1P02463 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.79■□□□□ 0.6
Col4a1P02463 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC18.79■□□□□ 0.6
Col4a1P02463 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC18.79■□□□□ 0.6
Col4a1P02463 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC18.79■□□□□ 0.6
Col4a1P02463 Gm18766-201ENSMUST00000189811 808 ntBASIC18.79■□□□□ 0.6
Col4a1P02463 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC18.79■□□□□ 0.6
Col4a1P02463 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.79■□□□□ 0.6
Col4a1P02463 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.79■□□□□ 0.6
Col4a1P02463 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col4a1P02463 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.79■□□□□ 0.6
Col4a1P02463 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col4a1P02463 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Col4a1P02463 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Col4a1P02463 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Col4a1P02463 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC18.79■□□□□ 0.6
Col4a1P02463 CT010506.4-201ENSMUST00000225457 351 ntBASIC18.79■□□□□ 0.6
Col4a1P02463 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Col4a1P02463 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Col4a1P02463 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
Col4a1P02463 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Gm13823-201ENSMUST00000119930 345 ntBASIC18.78■□□□□ 0.6
Col4a1P02463 H2-Pa-201ENSMUST00000182803 626 ntBASIC18.78■□□□□ 0.6
Col4a1P02463 Gm27437-201ENSMUST00000183429 107 ntBASIC18.78■□□□□ 0.6
Col4a1P02463 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC18.78■□□□□ 0.6
Col4a1P02463 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC18.78■□□□□ 0.6
Col4a1P02463 Gm6888-201ENSMUST00000221983 706 ntBASIC18.78■□□□□ 0.6
Col4a1P02463 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.78■□□□□ 0.6
Col4a1P02463 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.78■□□□□ 0.6
Col4a1P02463 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col4a1P02463 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Col4a1P02463 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Ighv8-7-201ENSMUST00000194349 297 ntBASIC18.77■□□□□ 0.6
Col4a1P02463 Gm7775-201ENSMUST00000218871 853 ntBASIC18.77■□□□□ 0.6
Col4a1P02463 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Col4a1P02463 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col4a1P02463 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col4a1P02463 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col4a1P02463 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col4a1P02463 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Gm15487-201ENSMUST00000122373 465 ntBASIC18.76■□□□□ 0.59
Col4a1P02463 Gm9824-201ENSMUST00000178707 561 ntBASIC18.76■□□□□ 0.59
Col4a1P02463 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col4a1P02463 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col4a1P02463 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms