Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.01□□□□□ -0.17
Lmx1bO88609 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Lmx1bO88609 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Gm14494-201ENSMUST00000118786 435 ntBASIC14□□□□□ -0.17
Lmx1bO88609 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Lmx1bO88609 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14□□□□□ -0.17
Lmx1bO88609 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Lmx1bO88609 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14□□□□□ -0.17
Lmx1bO88609 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lmx1bO88609 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lmx1bO88609 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm44729-201ENSMUST00000206759 2052 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm8344-201ENSMUST00000119813 856 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm9727-201ENSMUST00000161387 555 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm6257-201ENSMUST00000163864 910 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lmx1bO88609 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm2213-201ENSMUST00000197485 688 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 AC090659.1-201ENSMUST00000224334 768 ntBASIC13.99□□□□□ -0.17
Lmx1bO88609 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lmx1bO88609 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lmx1bO88609 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms