Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Pdlim3O70209 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
Pdlim3O70209 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Pdlim3O70209 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.02□□□□□ -0.17
Pdlim3O70209 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Pdlim3O70209 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Pdlim3O70209 Gm18101-201ENSMUST00000215769 548 ntBASIC14.02□□□□□ -0.17
Pdlim3O70209 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
Pdlim3O70209 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Pdlim3O70209 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.02□□□□□ -0.17
Pdlim3O70209 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Mir770-201ENSMUST00000103252 94 ntBASIC14.01□□□□□ -0.17
Pdlim3O70209 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.01□□□□□ -0.17
Pdlim3O70209 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Pdlim3O70209 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.01□□□□□ -0.17
Pdlim3O70209 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Pdlim3O70209 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Pdlim3O70209 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14□□□□□ -0.17
Pdlim3O70209 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Pdlim3O70209 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Pdlim3O70209 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14□□□□□ -0.17
Pdlim3O70209 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14□□□□□ -0.17
Pdlim3O70209 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Gm10676-201ENSMUST00000098778 3221 ntBASIC14□□□□□ -0.17
Pdlim3O70209 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
Pdlim3O70209 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
Pdlim3O70209 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Pdlim3O70209 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Pdlim3O70209 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Pdlim3O70209 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Pdlim3O70209 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Pdlim3O70209 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Pdlim3O70209 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Pdlim3O70209 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Pdlim3O70209 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms