Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Hmgb3O54879 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC12.83□□□□□ -0.35
Hmgb3O54879 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
Hmgb3O54879 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
Hmgb3O54879 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Hmgb3O54879 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Gm15378-201ENSMUST00000121894 207 ntBASIC12.83□□□□□ -0.36
Hmgb3O54879 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC12.83□□□□□ -0.36
Hmgb3O54879 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC12.83□□□□□ -0.36
Hmgb3O54879 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hmgb3O54879 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC12.82□□□□□ -0.36
Hmgb3O54879 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Hmgb3O54879 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC12.82□□□□□ -0.36
Hmgb3O54879 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Gm10698-201ENSMUST00000182663 604 ntBASIC12.82□□□□□ -0.36
Hmgb3O54879 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC12.82□□□□□ -0.36
Hmgb3O54879 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hmgb3O54879 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hmgb3O54879 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Hmgb3O54879 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Gm37856-201ENSMUST00000191634 999 ntBASIC12.81□□□□□ -0.36
Hmgb3O54879 Gm44878-201ENSMUST00000205812 1295 ntBASIC12.81□□□□□ -0.36
Hmgb3O54879 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC12.81□□□□□ -0.36
Hmgb3O54879 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Hmgb3O54879 Gm14026-201ENSMUST00000120625 1789 ntBASIC12.81□□□□□ -0.36
Hmgb3O54879 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Hmgb3O54879 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hmgb3O54879 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms