Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col6a3E9PWQ3 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Gm7561-201ENSMUST00000211203 886 ntBASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col6a3E9PWQ3 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Gm27920-201ENSMUST00000183953 96 ntBASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 AC134335.2-201ENSMUST00000227660 440 ntBASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Gm37519-201ENSMUST00000191687 2210 ntBASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Gm19220-201ENSMUST00000222682 803 ntBASIC15.25■□□□□ 0.03
Col6a3E9PWQ3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Zcchc6-207ENSMUST00000225576 2499 ntBASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Mir1897-201ENSMUST00000122581 272 ntBASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 AC122459.1-201ENSMUST00000228373 885 ntBASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a3E9PWQ3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Gm8565-201ENSMUST00000183259 1014 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Gm7783-201ENSMUST00000204795 781 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Haglr-201ENSMUST00000100000 2085 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Dctn4-202ENSMUST00000223590 1530 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Gm43138-201ENSMUST00000199123 708 ntBASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a3E9PWQ3 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms