Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cpsf3Q9QXK7 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Gm8318-201ENSMUST00000182954 872 ntBASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cpsf3Q9QXK7 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Gm14140-201ENSMUST00000119999 995 ntBASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cpsf3Q9QXK7 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Prob1-201ENSMUST00000097619 3021 ntBASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Gm7787-201ENSMUST00000216858 688 ntBASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Cpsf3Q9QXK7 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cpsf3Q9QXK7 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms