Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Gm25911-201ENSMUST00000157621 56 ntBASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.36■□□□□ 0.53
Ube3bQ9ES34 CT943659.1-201ENSMUST00000215459 326 ntBASIC18.36■□□□□ 0.53
Ube3bQ9ES34 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ube3bQ9ES34 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.35■□□□□ 0.53
Ube3bQ9ES34 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ube3bQ9ES34 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ube3bQ9ES34 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ube3bQ9ES34 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Gm5177-201ENSMUST00000183092 997 ntBASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 AC130669.1-201ENSMUST00000228537 1672 ntBASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ube3bQ9ES34 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Gm12008-201ENSMUST00000117791 755 ntBASIC18.32■□□□□ 0.52
Ube3bQ9ES34 H2af-ps-201ENSMUST00000119066 295 ntBASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Gm44492-201ENSMUST00000197012 141 ntBASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ube3bQ9ES34 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ube3bQ9ES34 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms