Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp11Q99K46 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.35■□□□□ 0.21
Usp11Q99K46 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.35■□□□□ 0.21
Usp11Q99K46 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp11Q99K46 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.35■□□□□ 0.21
Usp11Q99K46 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp11Q99K46 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.35■□□□□ 0.21
Usp11Q99K46 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Usp11Q99K46 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Usp11Q99K46 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Gm6858-201ENSMUST00000208582 1468 ntBASIC16.34■□□□□ 0.21
Usp11Q99K46 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
Usp11Q99K46 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Usp11Q99K46 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.34■□□□□ 0.21
Usp11Q99K46 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Usp11Q99K46 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Usp11Q99K46 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm15372-201ENSMUST00000120729 834 ntBASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm12895-201ENSMUST00000122214 226 ntBASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Usp11Q99K46 Asic1-205ENSMUST00000228185 1818 ntBASIC16.33■□□□□ 0.2
Usp11Q99K46 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Usp11Q99K46 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Usp11Q99K46 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Usp11Q99K46 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.32■□□□□ 0.2
Usp11Q99K46 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Gm44454-201ENSMUST00000198541 138 ntBASIC16.32■□□□□ 0.2
Usp11Q99K46 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.32■□□□□ 0.2
Usp11Q99K46 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.32■□□□□ 0.2
Usp11Q99K46 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.32■□□□□ 0.2
Usp11Q99K46 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Usp11Q99K46 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms