Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm13418-201ENSMUST00000119097 944 ntBASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm12260-201ENSMUST00000122447 411 ntBASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm7506-201ENSMUST00000207758 815 ntBASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Gm15590-201ENSMUST00000078419 552 ntBASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ushbp1Q8R370 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ushbp1Q8R370 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Gm25990-201ENSMUST00000102440 86 ntBASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.33■□□□□ 0.36
Ushbp1Q8R370 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ushbp1Q8R370 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Gm7230-201ENSMUST00000173026 815 ntBASIC17.31■□□□□ 0.36
Ushbp1Q8R370 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Gm4535-201ENSMUST00000182274 558 ntBASIC17.31■□□□□ 0.36
Ushbp1Q8R370 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms