Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Gm6007-201ENSMUST00000208170 823 ntBASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ddx54Q8K4L0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Gm8515-201ENSMUST00000194852 576 ntBASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx54Q8K4L0 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx54Q8K4L0 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Mir1938-201ENSMUST00000158746 100 ntBASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Gm24694-201ENSMUST00000180054 110 ntBASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Gm27663-201ENSMUST00000184839 110 ntBASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddx54Q8K4L0 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Ddx54Q8K4L0 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Ddx54Q8K4L0 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Ddx54Q8K4L0 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
Ddx54Q8K4L0 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx54Q8K4L0 Gm7901-201ENSMUST00000120430 1597 ntBASIC20.13■□□□□ 0.81
Ddx54Q8K4L0 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx54Q8K4L0 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms