Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 CT010478.1-201ENSMUST00000220747 2787 ntBASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Gm14722-201ENSMUST00000118943 689 ntBASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Brf1Q8CFK2 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Gm7230-201ENSMUST00000173026 815 ntBASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Brf1Q8CFK2 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Brf1Q8CFK2 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Asic1-205ENSMUST00000228185 1818 ntBASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm2308-201ENSMUST00000166539 1004 ntBASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm5682-201ENSMUST00000173402 505 ntBASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm10060-201ENSMUST00000212002 111 ntBASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Gm7461-201ENSMUST00000058918 827 ntBASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Brf1Q8CFK2 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms