Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Gm11873-201ENSMUST00000117877 1304 ntBASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Trim47Q8C0E3 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Gm8318-201ENSMUST00000182954 872 ntBASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Gm5264-201ENSMUST00000190584 848 ntBASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim47Q8C0E3 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gm7787-201ENSMUST00000216858 688 ntBASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim47Q8C0E3 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Gm15467-201ENSMUST00000120582 445 ntBASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Gm8000-201ENSMUST00000188378 592 ntBASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim47Q8C0E3 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms