Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.24■□□□□ 0.51
Trim56Q80VI1 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim56Q80VI1 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.23■□□□□ 0.51
Trim56Q80VI1 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.23■□□□□ 0.51
Trim56Q80VI1 Gm13597-201ENSMUST00000121239 375 ntBASIC18.23■□□□□ 0.51
Trim56Q80VI1 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim56Q80VI1 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Gm11453-201ENSMUST00000117318 1007 ntBASIC18.22■□□□□ 0.51
Trim56Q80VI1 Gm11779-201ENSMUST00000118541 368 ntBASIC18.22■□□□□ 0.51
Trim56Q80VI1 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.22■□□□□ 0.51
Trim56Q80VI1 Gm10499-201ENSMUST00000174094 934 ntBASIC18.22■□□□□ 0.51
Trim56Q80VI1 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim56Q80VI1 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.21■□□□□ 0.51
Trim56Q80VI1 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.21■□□□□ 0.51
Trim56Q80VI1 Gm7787-201ENSMUST00000216858 688 ntBASIC18.21■□□□□ 0.51
Trim56Q80VI1 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim56Q80VI1 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms