Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sh3rf1Q69ZI1 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Gm10052-201ENSMUST00000168019 960 ntBASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Gm7729-201ENSMUST00000050143 801 ntBASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Sh3rf1Q69ZI1 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Sh3rf1Q69ZI1 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Sh3rf1Q69ZI1 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Gm29707-201ENSMUST00000196325 491 ntBASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Sh3rf1Q69ZI1 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.69■□□□□ 0.1
Sh3rf1Q69ZI1 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms