Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.61■□□□□ 0.09
Six4Q61321 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Six4Q61321 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC15.61■□□□□ 0.09
Six4Q61321 Gm12350-201ENSMUST00000121208 462 ntBASIC15.61■□□□□ 0.09
Six4Q61321 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
Six4Q61321 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Mir5126-201ENSMUST00000175513 77 ntBASIC15.61■□□□□ 0.09
Six4Q61321 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Gm15590-201ENSMUST00000078419 552 ntBASIC15.61■□□□□ 0.09
Six4Q61321 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Six4Q61321 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Six4Q61321 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC15.6■□□□□ 0.09
Six4Q61321 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Asic1-205ENSMUST00000228185 1818 ntBASIC15.6■□□□□ 0.09
Six4Q61321 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Gm13036-201ENSMUST00000117799 748 ntBASIC15.6■□□□□ 0.09
Six4Q61321 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC15.6■□□□□ 0.09
Six4Q61321 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC15.6■□□□□ 0.09
Six4Q61321 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC15.6■□□□□ 0.09
Six4Q61321 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Six4Q61321 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC15.6■□□□□ 0.09
Six4Q61321 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Six4Q61321 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Six4Q61321 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
Six4Q61321 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.59■□□□□ 0.09
Six4Q61321 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
Six4Q61321 Gm5253-201ENSMUST00000187104 1025 ntBASIC15.59■□□□□ 0.09
Six4Q61321 Gm9682-201ENSMUST00000197505 556 ntBASIC15.59■□□□□ 0.09
Six4Q61321 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 AC138767.1-201ENSMUST00000222661 415 ntBASIC15.59■□□□□ 0.09
Six4Q61321 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Six4Q61321 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Six4Q61321 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Six4Q61321 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
Six4Q61321 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Six4Q61321 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Six4Q61321 BC037039-201ENSMUST00000192003 2205 ntBASIC15.58■□□□□ 0.08
Six4Q61321 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Six4Q61321 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Six4Q61321 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.58■□□□□ 0.08
Six4Q61321 Gm18489-201ENSMUST00000172565 551 ntBASIC15.58■□□□□ 0.08
Six4Q61321 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Gm45167-201ENSMUST00000208007 322 ntBASIC15.58■□□□□ 0.08
Six4Q61321 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Six4Q61321 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.58■□□□□ 0.08
Six4Q61321 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Six4Q61321 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Six4Q61321 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms