Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.13■□□□□ 0.33
Col11a1Q61245 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Gm11478-201ENSMUST00000117851 599 ntBASIC17.13■□□□□ 0.33
Col11a1Q61245 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC17.13■□□□□ 0.33
Col11a1Q61245 Gm3436-201ENSMUST00000179930 840 ntBASIC17.13■□□□□ 0.33
Col11a1Q61245 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.13■□□□□ 0.33
Col11a1Q61245 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Col11a1Q61245 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col11a1Q61245 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.13■□□□□ 0.33
Col11a1Q61245 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col11a1Q61245 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col11a1Q61245 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm5479-201ENSMUST00000160578 435 ntBASIC17.12■□□□□ 0.33
Col11a1Q61245 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.12■□□□□ 0.33
Col11a1Q61245 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm12091-201ENSMUST00000146791 830 ntBASIC17.12■□□□□ 0.33
Col11a1Q61245 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Col11a1Q61245 Gm28631-201ENSMUST00000190740 334 ntBASIC17.12■□□□□ 0.33
Col11a1Q61245 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.12■□□□□ 0.33
Col11a1Q61245 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col11a1Q61245 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Gm45668-201ENSMUST00000211271 493 ntBASIC17.11■□□□□ 0.33
Col11a1Q61245 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 AC164565.1-201ENSMUST00000217520 1484 ntBASIC17.11■□□□□ 0.33
Col11a1Q61245 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.11■□□□□ 0.33
Col11a1Q61245 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col11a1Q61245 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col11a1Q61245 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Col11a1Q61245 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Col11a1Q61245 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Gm15653-201ENSMUST00000119247 907 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col11a1Q61245 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col11a1Q61245 Gm45195-201ENSMUST00000205597 1008 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 Gm18062-201ENSMUST00000208020 547 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 Gm18055-201ENSMUST00000208254 547 ntBASIC17.1■□□□□ 0.33
Col11a1Q61245 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.1■□□□□ 0.33
Col11a1Q61245 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms