Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Upf3bQ3ULL6 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3bQ3ULL6 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gm7230-201ENSMUST00000173026 815 ntBASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3bQ3ULL6 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm14722-201ENSMUST00000118943 689 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm18195-201ENSMUST00000207604 706 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Gm10060-201ENSMUST00000212002 111 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3bQ3ULL6 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms