Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm8825-201ENSMUST00000182565 998 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm4518-201ENSMUST00000182638 718 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.22■□□□□ 0.51
Limch1Q3UH68 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.22■□□□□ 0.51
Limch1Q3UH68 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Limch1Q3UH68 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Gm9172-201ENSMUST00000212092 954 ntBASIC18.21■□□□□ 0.51
Limch1Q3UH68 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Limch1Q3UH68 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
Limch1Q3UH68 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Limch1Q3UH68 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Limch1Q3UH68 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Limch1Q3UH68 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Gm25745-201ENSMUST00000174945 133 ntBASIC18.2■□□□□ 0.5
Limch1Q3UH68 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Limch1Q3UH68 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.19■□□□□ 0.5
Limch1Q3UH68 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Mir5126-201ENSMUST00000175513 77 ntBASIC18.19■□□□□ 0.5
Limch1Q3UH68 Gm8000-201ENSMUST00000188378 592 ntBASIC18.19■□□□□ 0.5
Limch1Q3UH68 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Limch1Q3UH68 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Limch1Q3UH68 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Limch1Q3UH68 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms