Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.08■□□□□ 0.33
Col6a1Q04857 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.08■□□□□ 0.32
Col6a1Q04857 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC17.08■□□□□ 0.32
Col6a1Q04857 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC17.08■□□□□ 0.32
Col6a1Q04857 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.08■□□□□ 0.32
Col6a1Q04857 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Col6a1Q04857 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a1Q04857 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col6a1Q04857 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Gm18489-201ENSMUST00000172565 551 ntBASIC17.07■□□□□ 0.32
Col6a1Q04857 Gm18889-201ENSMUST00000174284 929 ntBASIC17.07■□□□□ 0.32
Col6a1Q04857 Mir6977-201ENSMUST00000184960 64 ntBASIC17.07■□□□□ 0.32
Col6a1Q04857 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.07■□□□□ 0.32
Col6a1Q04857 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a1Q04857 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a1Q04857 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.06■□□□□ 0.32
Col6a1Q04857 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Mir449b-201ENSMUST00000104833 80 ntBASIC17.06■□□□□ 0.32
Col6a1Q04857 Gm11424-201ENSMUST00000121929 829 ntBASIC17.06■□□□□ 0.32
Col6a1Q04857 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC17.06■□□□□ 0.32
Col6a1Q04857 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.06■□□□□ 0.32
Col6a1Q04857 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col6a1Q04857 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a1Q04857 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Rprl2-201ENSMUST00000157150 290 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Gm27622-201ENSMUST00000183779 60 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 Hist1h2al-201ENSMUST00000091708 339 ntBASIC17.05■□□□□ 0.32
Col6a1Q04857 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a1Q04857 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.05■□□□□ 0.32
Col6a1Q04857 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms