Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col8a1Q00780 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Col8a1Q00780 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC13.2□□□□□ -0.3
Col8a1Q00780 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.2□□□□□ -0.3
Col8a1Q00780 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.2□□□□□ -0.3
Col8a1Q00780 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.2□□□□□ -0.3
Col8a1Q00780 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC13.2□□□□□ -0.3
Col8a1Q00780 Gm2423-201ENSMUST00000074863 733 ntBASIC13.2□□□□□ -0.3
Col8a1Q00780 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col8a1Q00780 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC13.19□□□□□ -0.3
Col8a1Q00780 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.19□□□□□ -0.3
Col8a1Q00780 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm27430-201ENSMUST00000184585 107 ntBASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm44333-201ENSMUST00000197168 107 ntBASIC13.19□□□□□ -0.3
Col8a1Q00780 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.19□□□□□ -0.3
Col8a1Q00780 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC13.19□□□□□ -0.3
Col8a1Q00780 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col8a1Q00780 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.18□□□□□ -0.3
Col8a1Q00780 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.18□□□□□ -0.3
Col8a1Q00780 AC127302.2-201ENSMUST00000215212 268 ntBASIC13.18□□□□□ -0.3
Col8a1Q00780 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col8a1Q00780 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col8a1Q00780 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col8a1Q00780 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms